Publicly available squamate (and the Tuatara) genome assemblies (associated with Pinto et al. 2023)
Last updated 01/11/2024 (bolded assemblies were added in the most recent update)
Current squamate genome species total: 145
In-house collaborative reference genomes:
PSA: Clicking file format hyperlinks begins download.
Genomes (Annotated whole genome assemblies)
Gecko genomes:
Non-geckos:
- Eublepharis macularius [MPM_Emac_v1.0.1] – fasta, gff, mat, pat, hap1, hap2
- Sphaerodactylus townsendi [MPM_Stown_v2.3] – fasta, gff, transcripts, peptides
Non-geckos:
Transcriptomes (Assembled RNA expression data)
Multi-tissue Transcriptomes:
Single-tissue Transcriptomes:
- Chamaeleo calyptratus (Chameleonidae)
- Lepidodactylus lugubris (Gekkonidae)
- Sphaerodactylus townsendi (Sphaerodactylidae)
Single-tissue Transcriptomes:
- Chamaeleo calyptratus – eye (Chameleonidae)
- Correlophus ciliatus – eye (Diplodactylidae)
- Gehyra mutilata – eye (Gekkonidae)
- Hemidactylus turcicus – eye (Gekkonidae)
- Lialis burtonis – eye (Pygopodidae)
- Phelsuma laticauda – eye (Gekkonidae)
- Sphaerodactylus townsendi – head (Sphaerodactylidae)
Header graphic by Ethan Kocak (https://twitter.com/Blackmudpuppy) commissioned by Tony Gamble to promote our collaborative paper "The revised reference genome of the leopard gecko (Eublepharis macularius)..."
